The method becomes a bad idea when the grow needs more room than the schedule is willing to give it.
Searchers asking when 12/12 from seed is a bad idea are usually not looking for theory. They are trying to avoid a run that feels undersized, rushed, badly matched to the cultivar, or too limited for the structure they actually wanted. The short answer is simple: 12/12 from seed is a weak fit when you need the plant to build more body before flower, when the room can honestly support that extra body, or when the cultivar already tends to stretch enough that an early flower schedule will not really simplify the run.
That is why this page is not a contradiction of the main 12/12 guide. It is the counterweight that makes that guide more trustworthy. If the plant needs more time to establish, if you want heavier training, or if the cabinet is not actually the limiting factor, then a longer path may serve the grow better than forcing an edited one. Use how long a compact grow actually takes if the timing pressure is making the decision feel more urgent than it really is.
Cultivar fit matters here more than a lot of growers want to admit. Some plants stay compact, branch in a way that still feels readable, and reward the smaller, more disciplined timeline. Others ask for more runway, more body, or more forgiveness before flower pressure becomes the dominant story. If the plant choice itself is uncertain, compare this page with best cannabis strains for small spaces before treating 12/12 like a universal answer.